| Title:
|
Fluorescenční proteiny - zářící makromolekuly odhalující buněčná tajemství (Czech) |
| Title:
|
Fluorescent Proteins - Glowing Macromolecules That Unveil Cell Secrets (English) |
| Author:
|
Homolka, Radim |
| Author:
|
Kozáková, Veronika |
| Author:
|
Suja, Matyáš |
| Author:
|
Plášek, Jaromír |
| Language:
|
Czech |
| Journal:
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Pokroky matematiky, fyziky a astronomie |
| ISSN:
|
0032-2423 |
| Volume:
|
63 |
| Issue:
|
4 |
| Year:
|
2018 |
| Pages:
|
245-262 |
| Summary lang:
|
Czech |
| . |
| Category:
|
physics |
| . |
| Summary:
|
Fluorescenční proteiny (FP) jsou užitečným nástrojem pro studium biologických procesů na molekulární úrovni přímo v živých buňkách. Poprvé byly tyto proteiny izolovány a studovány před více než půl stoletím. Postupem času byly objasněny jejich funkce, struktura a vlastnosti a byla popsána řada možností jejich využití v biomedicínském výzkumu. Cílem tohoto článku je seznámit čtenáře se základními poznatky o struktuře a optických vlastnostech této mimořádně zajímavé skupiny bílkovin i hlavními směry jejich praktických aplikací. (Czech) |
| . |
| Date available:
|
2019-01-29T13:23:00Z |
| Last updated:
|
2020-01-05 |
| Stable URL:
|
http://hdl.handle.net/10338.dmlcz/147583 |
| . |
| Reference:
|
[1] Alberts, B.: Molecular biology of the cell.. 6th ed., Garland Science, New York and Abingdon, 2014. |
| Reference:
|
[2] Alieva, N. O.: Diversity and evolution of coral fluorescent proteins.. PLOS ONE 3 (2008), e2680. 10.1371/journal.pone.0002680 |
| Reference:
|
[3] Andresen, M.: Structural basis for reversible photoswitching in Dronpa.. Proc. Natl. Acad. Sci. USA 104 (2007), 13005–13009. 10.1073/pnas.0700629104 |
| Reference:
|
[4] Arai, Y., Nagai, T.: Extensive use of FRET in biological imaging.. Microscopy 62 (2013), 419–428. 10.1093/jmicro/dft037 |
| Reference:
|
[5] Betzig, E.: Imaging intracellular fluorescent proteins at nanometer resolution.. Science 313 (2006), 1642–1645. 10.1126/science.1127344 |
| Reference:
|
[6] Carisey, A.: Fluorescence recovery after photobleaching.. In: Cell Migration Methods in Molecular Biology (Methods and Protocols), Humana Press, 2011. |
| Reference:
|
[7] Cody, C.: Chemical structure of the hexapeptide chromophore of the Aequorea green-fluorescent protein.. Biochemistry 32 (1993), 1212–1218. 10.1021/bi00056a003 |
| Reference:
|
[8] Cubitt, A. B.: Understanding, improving and using green fluorescent proteins.. Trends Biochem. Sci. 20 (1995), 448–455. 10.1016/S0968-0004(00)89099-4 |
| Reference:
|
[9] Černý, J.: Zelený fluorescenční protein.. Vesmír 88 (2009), 228–231. |
| Reference:
|
[10] Day, R. N., Davidson, M. W.: The fluorescent protein palette: tools for cellular imaging.. Chem. Soc. Rev. 38 (2009), 2887–2921. 10.1039/b901966a |
| Reference:
|
[11] Ehrenberg, M.: Scientific background on the Nobel Prize in chemistry 2008.. The Royal Swedish Academy of Sciences, Stockholm, 2008. |
| Reference:
|
[12] Heim, R., Cubitt, A. B., Tsien, R. Y.: Improved green fluorescence.. Nature 373 (1995), 663–664. 10.1038/373663b0 |
| Reference:
|
[13] Heim, R., Prasher, D. C., Tsien, R. Y.: Wavelength mutations and posttranslational autoxidation of green fluorescent protein.. Proc. Natl. Acad. Sci. USA 91 (1994), 12501–12504. 10.1073/pnas.91.26.12501 |
| Reference:
|
[14] Chalfie, M.: Green fluorescent protein.. Photochem. Photobiol. 62 (1995), 651–656. 10.1111/j.1751-1097.1995.tb08712.x |
| Reference:
|
[15] Chalfie, M.: Green fluorescent protein as a marker for gene expression.. Science 263 (1994), 802–805. 10.1126/science.8303295 |
| Reference:
|
[16] Chudakov, D. M.: Fluorescent proteins and their applications in imaging living cells and tissues.. Physiol. Rev. 90 (2010), 1103–1163. 10.1152/physrev.00038.2009 |
| Reference:
|
[17] Kanehira, K., Uchida, Y., Saito, T.: Visualization of avian influenza virus infected cells using self-assembling fragments of green fluorescent protein.. Electron. J. Biotechnol. 19 (2016), 61–64. 10.1016/j.ejbt.2015.08.008 |
| Reference:
|
[18] Kimmel, C. B.: Stages of embryonic development of the zebrafish.. Dev. Dyn. 203 (2002), 253–310. 10.1002/aja.1002030302 |
| Reference:
|
[19] Kiyonaka, S.: Genetically encoded fluorescent thermosensors visualize subcellular thermoregulation in living cells.. Nat. Methods 10 (2013), 1232–1238. 10.1038/nmeth.2690 |
| Reference:
|
[20] Koldenkova, V. P., Nagai, T.: Genetically encoded Ca$^{2+}$ indicators: Properties and evaluation.. Biochim. Biophys. Acta 1833 (2013), 1787–1797. 10.1016/j.bbamcr.2013.01.011 |
| Reference:
|
[21] Labas, Y. A.: Diversity and evolution of the green fluorescent protein family.. Proc. Natl. Acad. Sci. USA 99 (2002), 4256–4261. 10.1073/pnas.062552299 |
| Reference:
|
[22] Lakowicz, J. R.: Principles of fluorescence spectroscopy.. Springer US, Boston, 2006. |
| Reference:
|
[23] Lippincott-Schwartz, J., Patterson, G. H.: Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging.. Trends Cell Biol. 19 (2009), 555–565. 10.1016/j.tcb.2009.09.003 |
| Reference:
|
[24] Livet, J.: Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system.. Nature 450 (2007), 56–62. 10.1038/nature06293 |
| Reference:
|
[25] Lukyanov, K. A.: Photoactivatable fluorescent proteins.. Nat. Rev. Mol. Cell Biol. 6 (2005), 885–891. 10.1038/nrm1741 |
| Reference:
|
[26] Martynov, V. I.: Genetically encoded fluorescent indicators for live cell pH imaging.. Biochim. Biophys. Acta 1862 (2018), 2924–2939. 10.1016/j.bbagen.2018.09.013 |
| Reference:
|
[27] Merola, F.: Engineering fluorescent proteins towards ultimate performances: lessons from the newly developed cyan variants.. Methods Appl. Fluoresc. 4 (2016), [online] 012001. 10.1088/2050-6120/4/1/012001 |
| Reference:
|
[28] Miesenbock, G., De Angelis, D. A., Rothman, J. E.: Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins.. Nature 394 (1998), 192–195. 10.1038/28190 |
| Reference:
|
[29] Mishin, A. S.: Novel uses of fluorescent proteins.. Curr. Opin. Chem. Biol. 27 (2015), 1–9. 10.1016/j.cbpa.2015.05.002 |
| Reference:
|
[30] Miyawaki, A.: Fluorescent indicators for Ca$^{2+}$ based on green fluorescent proteins and calmodulin.. Nature 388 (1997), 882–887. 10.1038/42264 |
| Reference:
|
[31] Morise, H.: Intermolecular energy transfer in the bioluminescent system of Aequorea.. Biochemistry 13 (1974), 2656–2662. 10.1021/bi00709a028 |
| Reference:
|
[32] Orij, R.: In vivo measurement of cytosolic and mitochondrial pH using a pHsensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growth.. Microbiology 155 (2009), 268–278. 10.1099/mic.0.022038-0 |
| Reference:
|
[33] Ormo, M.: Crystal structure of the Aequorea victoria green fluorescent protein.. Science 273 (1996), 1392–1395. 10.1126/science.273.5280.1392 |
| Reference:
|
[34] Plášek, J.: Optická mikroskopie od van Leeuwenhoeka k Nobelově ceně za chemii v roce 2014.. Čs. čas. fyz. 65 (2015), 365–369. |
| Reference:
|
[35] Plášek, J.: Superrozlišení v optické mikroskopii: Nobelova cena za chemii za rok 2014.. Pokroky Mat. Fyz. Astronom. 60 (2015), 19–38. |
| Reference:
|
[36] Reits, E. A. J., Neefjes, J. J.: From fixed to FRAP: measuring protein mobility and activity in living cells.. Nat. Cell Biol. 3 (2001), E145–E147. 10.1038/35078615 |
| Reference:
|
[37] Roda, A.: Discovery and development of the green fluorescent protein, GFP: the 2008 Nobel Prize.. Anal. Bioanal. Chem. 396 (2010), 1619–1622. |
| Reference:
|
[38] San Pietro, R. M., Prendergast, F. G., Ward, W. W.: Sequence of the chromogenic hexapeptide of Renilla green fluorescent protein.. Photochem. Photobiol. 57 (1993), S63. |
| Reference:
|
[39] Shaner, N. C.: Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp red fluorescent protein.. Nat. Biotechnol. 22 (2004), 1567–1572. 10.1038/nbt1037 |
| Reference:
|
[40] Shaner, N. C., Steinbach, P. A., Tsien, R. Y.: A guide to choosing fluorescent proteins.. Nat. Methods 2 (2005), 905–909. 10.1038/nmeth819 |
| Reference:
|
[41] Shimizu, K.: Genetic engineered color silk: fabrication of a photonics material through a bioassisted technology.. Bioinspir. Biomim. 13 (2018), 041003. 10.1088/1748-3190/aabbe9 |
| Reference:
|
[42] Shimomura, O.: The discovery of aequorin and green fluorescent protein.. J. Microscop. 217 (2005), 3–15. MR 2109395, 10.1111/j.0022-2720.2005.01441.x |
| Reference:
|
[43] Terskikh, A.: “Fluorescent timer”: Protein that changes color with time.. Science 290 (2000), 1585–1588. 10.1126/science.290.5496.1585 |
| Reference:
|
[44] Thorn, K.: Genetically encoded fluorescent tags.. Mol. Biol. Cell 28 (2017), 848–857. 10.1091/mbc.e16-07-0504 |
| Reference:
|
[45] Tsien, R. Y.: Constructing and exploiting the fluorescent protein paintbox (Nobel Lecture).. Angew. Chem. Int. Ed. Engl. 48 (2009), 5612–5626. 10.1002/anie.200901916 |
| Reference:
|
[46] Tsien, R. Y.: The green fluorescent protein.. Annu. Rev. Biochem. 67 (1998), 509–544. 10.1146/annurev.biochem.67.1.509 |
| Reference:
|
[47] Verkhusha, V. V.: Common pathway for the red chromophore formation in fluorescent proteins and chromoproteins.. Chem. Biol. 11 (2004), 845–854. 10.1016/j.chembiol.2004.04.007 |
| Reference:
|
[48] Wallrabe, H., Periasamy, A.: Imaging protein molecules using FRET and FLIM microscopy.. Curr. Opin. Biotechnol. 16 (2005), 19–27. 10.1016/j.copbio.2004.12.002 |
| Reference:
|
[49] Wan, H. Y.: Generation of two-color transgenic zebrafish using the green and red fluorescent protein reporter genes gfp and rfp.. Mar. Biotechnol. 4 (2002), 146–154. 10.1007/s10126-001-0085-3 |
| Reference:
|
[50] Wang, Y. X., Shyy, J. Y. J., Chien, S.: Fluorescence proteins, live-cell imaging, and mechanobiology: Seeing is believing.. Annu. Rev. Biomed. Eng. 10 (2008), 1–38. 10.1146/annurev.bioeng.010308.161731 |
| Reference:
|
[51] Ward, W. W.: Spectrophotometric identity of the energy-transfer chromophores in Renilla and Aequorea green-fluorescent protein.. Photochem. Photobiol. 31 (1980), 611–615. 10.1111/j.1751-1097.1980.tb03755.x |
| Reference:
|
[52] Warner, K. D.: Structural basis for activity of highly efficient RNA mimics of green fluorescent protein.. Nat. Struct. Mol. Biol. 21 (2014), 658–663. 10.1038/nsmb.2865 |
| Reference:
|
[53] Weissman, T. A., Pan, Y. A.: Brainbow: New resources and emerging biological applications for multicolor genetic labeling and analysis.. Genetics 199 (2015), 293–306. 10.1534/genetics.114.172510 |
| Reference:
|
[54] Yang, F., Moss, L. G., Phillips, G. N.: The molecular structure of green fluorescent protein.. Nat. Biotechnol. 14 (1996), 1246–1251. 10.1038/nbt1096-1246 |
| Reference:
|
[55] Zimmer, M.: Green fluorescent protein: (GFP): Applications, structure, and related photophysical behavior.. Chem. Rev. 102 (2002), 759–781. |
| Reference:
|
[56] Zimmer, M.: GFP – from jellyfish to the Nobel prize and beyond.. Chem. Soc. Rev. 38 (2009), 2823–2832. 10.1039/b904023d |
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